FIDDLE

FIDDLE (Finding Interactions using Diagram Driven modeL Extension) is a tool to automatically assemble or extend models with the knowledge extracted from published literature. The two main methods developed as part of FIDDLE are called Breadth First Addition (BFA) and Depth First Addition (DFA), and they are based on network search algorithms.

Documentation

Documentation for FIDDLE can be found at Documentation Status

Tutorial

An interactive tutorial notebook to use FIDDLE can be accessed via Binder

Flow Diagram

CItation

To use and cite the FIDDLE tool, please use the following:

  • Butchy, Adam A., Cheryl A. Telmer, Natasa Miskov-Zivanov. "Automating Knowledge-Driven Model Recommendation: Methodology, Evaluation, and Key Challenges." arXiv preprint arXiv:2301.11397 (2023).